Physics of Living Systems

Publications

Ott Lab

PI: Edward Ott


  • "Multiscale Dynamics in Communities of Phase Oscillators," Dustin Anderson, Ari Tenzer, Gilad Barlev, Michelle Girvan, Thomas M. Antonsen, and Edward Ott, Chaos 22, 013102 (2012). (doi: 10.1063/1.3672513)
  • "Implications of Functional Similarity for Gene Regulatory Interactions," Kimberly Glass, Edward Ott, Wolfgang Losert, and Michelle Girvan, J. Royal Soc. Interface 9, 1625-1636 (2012). (doi: 10.1098/rsif.2011.0585)

  • "Iterative Time Reversal with Tunable Convergence," B. T. Taddese, T. M. Antonsen, E. Ott, et al., Electron. Lett. 47 [21], 1165-U19 (2011). (doi: 10.1049/el.2011.2047)
  • "Chaos Regularization of Quantum Tunneling Rates," Louis M. Pecora, Hoshik Lee, Dong-Ho Wu, Thomas Antonsen, Ming-Jer Lee, and Edward Ott, Phys. Rev. E 83, 065201 (2011). (doi: 10.1103/PhysRevE.83.065201)
  • "The Dynamics of Network Coupled Phase Oscillators: An Ensemble Approach," Gilad Barlev, Thomas M. Antonsen, and Edward Ott, Chaos 21 [2], 025103 (2011). (doi: 10.1063/1.3596711)
  • "Dynamics and Pattern Formation in Large Systems of Spatially-Coupled Oscillators with Finite Response Times," Wai Shing Lee, Juan G. Restrepo, Edward Ott, and Thomas M. Antonsen, Chaos 21 [2], 023122 (2011). (doi: 10.1063/1.3596697)
  • "Comment on 'Long Time Evolution of Phase Oscillator Systems,'" Edward Ott, Brian R. Hunt, and Thomas M. Antonsen, Jr., Chaos 21 [2], 025112 (2011). (doi: 10.1063/1.3574931)
  • "Local Synchronization in Complex Networks of Coupled Oscillators," John Stout, Matthew Whiteway, Edward Ott, Michelle Girvan, and Thomas M. Antonsen, Chaos 21 [2], 025109 (2011). (doi: 10.1063/1.3581168)
  • "Quantum Chaos of a Mixed Open System of Kicked Cold Atoms," Yevgeny Krivolapov, Shmuel Fishman, Edward Ott, Thomas Antonsen, et al., Phys. Rev. E 83 [1], 016204 (2011). (doi: 10.1103/PhysRevE.83.016204)

  • "Experimental Examination of the Effect of Short Ray Trajectories in Two-Port Wave-Chaotic Scattering Systems," J. H. Yeh, J. A. Hart, E. Bradshaw, T. M. Antonsen, E. Ott, and S. M. Anlage, Phys. Rev. E 82 [4], 041114, Part 1 (2010). (doi: 10.1103/PhysRevE.82.041114)
  • "Obstacle and Predator Avoidance in a Model for Flocking," N. A. Mecholsky, E. Ott, and T. M. Antonsen, Physica D: Nonlinear Phenomena 239 [12], 988 (2010). (doi: 10.1016/j.physd.2010.02.007)
  • "Universal and Nonuniversal Properties of Wave-Chaotic Scattering Systems," J. H. Yeh, J. A. Hart, E. Bradshaw, T. M. Antonsen, E. Ott, and S. M. Anlage, Phys. Rev. E 81 [2], 0205201 (2010). (doi: 10.1103/PhysRevE.81.025201)

  • "Chaotic Time Reversed Acoustics: Sensitivity of the Loschmidt Echo to Perturbations," B. T. Taddese, M. D. Johnson, J. A. Hart, T. M. Antonsen, E. Ott, and S. M. Anlage, Acta Physica Polonica A 116 [5], 729-732 (2009).
  • "Effect of Short Ray Trajectories on the Scattering Statistics of Wave Chaotic Systems," J. A. Hart, T. M. Antonsen, E. Ott, Phys. Rev. E 80 [4], 041109, Part 1 (2009). (doi: 10.1103/PhysRevE.80.041109)
  • "Sensor Based on Extending the Concept of Fidelity to Classical Waves," B. T. Taddese, J. Hart, T. M. Antonsen, E. Ott, S. Anlage, Appl. Phys. Lett. 95 [11], 114103 (2009). (doi: 10.1063/1.3232214)
  • "Large Coupled Oscillator Systems with Heterogeneous Interaction Delays," W. S. Lee, E. Ott, T. M. Antonsen, Phys. Rev. Lett. 108 [4], 044101 (2009). (doi: 10.1103/PhysRevLet.103.044101)
  • "Longtime Evolution of Phase Oscillator Systems," E. Ott, T. M. Antonsen, Chaos 19 [2], 023117 (2009). (doi: 10.1063/1.3136851)
  • "Exact Results for the Kuramoto Model with a Bimodal Frequency Distribution," E. A. Martens, E. Barreto, S. H. Strogatz, E. Ott, P. So, T. Antonsen, Phys. Rev. E 79 [2], 026204, Part 1 (2009). (doi: 10.1103/PhysRevE.79.026204)
  • "Scattering a Pulse from a Chaotic Cavity: Transitioning from Algebraic to Exponential Decay," J. A. Hart, T. M. Antonsen, E. Ott, Phys. Rev. E 79 [1], 016208, Part 2 (2009). (doi: 10.1103/PhysRevE.79.016208)

  • "Assessing Predictability with a Local Ensemble Kalman Filter," David Kuhl, Istvan Szunyogh, Eric J. Kostelich, Gyorgyi Gyarmati, D. J. Patil, Michael Oczkowski, Brian R. Hunt, Eugenia Kalnay, Edward Ott, and James A. Yorke, J. Atmos. Sci. 64, 1116 (2007). (doi: 10.1175/JAS3885.1)

  • "Statistics of Impedance and Scattering Matrices of Chaotic Microwave Cavities with Multiple Ports," Xing Zheng, Thomas M. Antonsen Jr, and Edward Ott, Electromagnetics 26 (1), 37-55 (2006). (doi: 10.1080/02726340500214902)
  • "Statistics of Impedance and Scattering Matrices in Chaotic Microwave Cavities: Single Channel Case," Xing Zheng, T. M. Antonsen, and E. Ott, Electromagnetics 26 (1), 3-35 (2006). (doi: 10.1080/02726340500214894)
  • "Aspects of the Scattering and Impedance Properties of Chaotic Microwave Cavities," S. Hemmady, X. Zheng, T. M. Antonsen, E. Ott, and S. M. Anlage, Acta Physica Polonica A 109 (1), 65 (2006).
  • "Characterization of Fluctuations of Impedance and Scattering Matrices in Wave Chaotic Scattering," Xing Zheng, Sameer Hemmady, Thomas M. Antonsen, Jr., Steven M. Anlage, and Edward Ott, Phys. Rev. E 73 (5), 046208 (2006). (doi: 10.1103/PhysRevE.73.046208)
  • "Universal Properties of Two-Port Scattering, Impedance, and Admittance Matrices of Wave-Chaotic Systems," Sameer Hemmady, Xing Zheng, James Hart, Thomas M. Antonsen, Jr., Edward Ott, and Steven M. Anlage, Phys. Rev. E 74 (3), 036213 (2006). (doi: 10.1103/PhysRevE.74.036213)
  • "Experimental Test of Universal Conductance Fluctuations by Means of Wave-Chaotic Microwave Cavities," S. Hemmady, J. Hart, X. Zheng, T. M. Antonsen, Jr., E. Ott, and S. M. Anlage, Phys. Rev. B 74 (19), 195326 (2006). (doi: 10.1103/PhysRevB.74.195326)
  • "Local Ensemble Kalman Filtering in the Presence of Model Bias," Seung-Hong Baek, Brian R. Hunt, Eugenia Kalnay, Edward Ott, and Istvan Szunyogh, Tellus A 58, 293 (2006). (doi: 10.1111/j.1600-0870.2006.00178.x)
  • "Emergence of Synchronization in Complex Networks of Interacting Dynamical Systems," Juan G. Restrepo, Edward Ott, and Brian R. Hunt, Physica D 224, 115 (2006). (doi: 10.1016/j.physd.2006.08.026)
  • "Extracting Envelopes of Non-Zonally Propagating Rossby Wave Envelopes," Aleksey V. Zimin, Istvan Szunyogh, Brian R. Hunt, and Edward Ott, Monthly Weather Review 134, 1329 (2006). (doi: 10.1175/MWR3122.1)
  • "Experimental Test of Universal Conductance Fluctuations by Means of Wave-Chaotic Microwave Cavities," Sameer Hemmady, James Hart, Xing Zheng, Thomas M. Antonsen, Jr., Edward Ott, and Steven M. Anlage, Phys. Rev. B 74, 195326 (2006). (doi: 10.1103/PhysRevB.74.195326)

  • "Intermittency in Two-Dimensional Turbulence with Drag," Y.-K. Tsang, E. Ott, T. Antonsen, and P. Guzdar, Phys. Rev. E 71, 066313 (2005). (doi: 10.1103/PhysRevE.71.066313)
  • "Onset of Synchronization in Large Networks of Coupled Oscillators," J. Restrepo, E. Ott, and B. R. Hunt, Phys. Rev. E 71, 036151 (2005). (doi: 10.1103/PhysRevE.71.036151)
  • "Universal Impedance Fluctuations in Wave Chaotic Systems," Sameer Hemmady, Xing Zheng, Edward Ott, Thomas M. Antonsen, and Steven M. Anlage, Phys. Rev. Lett. 94 (1), 014102 (2005). (doi: 10.1103/PhysRevLett.94.014102)
  • "Modeling Walker Synchronization on the Millennium Bridge," Bruno Eckhardt, Edward Ott, Steven H. Strogatz, Daniel M. Abrams, and Allan McRobie, Phys. Rev. E 75, 021110 (2005). (doi: 10.1103/PhysRevE.75.021110)

  • "Simple Model for Reverse Buoyancy in a Vibrated Granular System," G. Gutierrez, O. Pozo, L. I. Reyes, R. Paredes. J. R. Drake and E. Ott, Europhys. Lett. 67, 369 (2004). (doi: 10.1209/epl/i2003-10300-3)
  • "Power-Law Decay and Self-Similar Distributions in Stadium-Type Billiards," D. N. Armstead, B. R. Hunt, and E. Ott, Physica D 193, 96 (2004). (doi: 10.1016/j.physd.2004.01.013)
  • "Segregation in a Monolayer of Magnetic Spheres," J. Stambaugh, Z. Smith, E. Ott, and W. Losert, Phys. Rev. E 70, 031304 (2004). (doi: 10.1103/PhysRevE.70.031304)
  • "Phase Synchronization and Entrainment in a Chaotic Laser Array," D. DeShazer, R. Breban, E. Ott, and R. Roy, Int. J. Bifurcations and Chaos 14, 3205 (2004). (doi: 10.1142/S0218127404011302)
  • "Communication with a Chaotic Traveling Wave Tube Microwave Generator," V. Dronov, M. Hendrey, T. M. Antonsen, and E. Ott, Chaos 14, 30 (2004). (doi: 10.1063/1.1622352)
  • "Growing Networks with Geographical Attachment Preference: Emergence of Small Worlds," J. Ozik, B. R. Hunt, and E. Ott, Phys. Rev. E 69, 026108 (2004). (doi: 10.1103/PhysRevE.69.026108)
  • "Estimating the State of Large Spatio-Temporally Chaotic Systems," E. Ott et al., Phys. Lett. A 330, 365 (2004). (doi: 10.1016/j.physleta.2004.08.004)
  • "Four-Dimensional Ensemble Kalman Filtering," E. Ott (with B. Hunt, et al.), Tellus A 56, 273 (2004). (doi: 10.1111/j.1600-0870.2004.00066.x)
  • "Desynchronization Waves and Localized Instabilities in Oscillator Arrays," J. G. Restrepo, B. R. Hunt, and E. Ott, Phys. Rev. Lett. 93, 114101 (2004). (doi: 10.1103/PhysRevLett.93.114101)
  • "Localized Error Bursts in Estimating the State of Spatiotemporal Chaos," S.-J. Baek, B. R. Hunt, I. Szunyogh, A. V. Zimin, and E. Ott, Chaos 14, 1042 (2004). (doi: 10.1063/1.1788091)
  • "A Local Ensemble Kalman Filter for Atmospheric Data Assimilation," E. Ott et al., Tellus A 56, 415 (2004). (doi: 10.1111/j.1600-0870.2004.00076.x)

  • "Phase Synchronization of Chaotic Attractors in the Presence of Two Competing Periodic Signals," R. Breban and E. Ott, Phys. Rev. E 65, 056219 (2002). (doi: 10.1103/PhysRevE.65.056219)
  • "Evolving Networks with Multispecies Nodes and Spread in the Initial Number of Links," J.-W. Kim, B. Hunt, and E. Ott, Phys. Rev. E 66, 046115 (2002). (doi: 10.1103/PhysRevE.66.046115)
  • "The Onset of Synchronization in Systems of Globally Coupled Chaotic and Periodic Oscillators," E. Ott, P. So, E. Barretto, and T. Antonsen, Physica D 173, 29 (2002). (doi: 10.1016/S0167-2789(02)00663-2)
  • "Long Time Algebraic Relaxation in Chaotic Billiards," D. N. Armstead, B. R. Hunt, and E. Ott, Phys. Rev. Lett. 89, 284101 (2002). (doi: 10.1103/PhysRevLett.89.284101)

  • "Power Spectrum of Passive Scalars in Two Dimensional Chaotic Flows," Guo-Cheng Yuan, Keeyeol Nam, Thomas M. Antonsen, Jr., Edward Ott, and Parvez N. Guzdar, Chaos 10, 39 (2000). (doi: 10.1063/1.166474)
  • "Langrangian Chaos and the Effect of Drag on the Enstrophy Cascade in Two-Dimensional Turbulence," Keeyeol Nam, Edward Ott, Thomas M. Antonsen, Jr., and Parvez N. Guzdar, Phys. Rev. Lett. 84, 5134 (2000). (doi: 10.1103/PhysRevLett.84.5134)
  • "Stabilization of Z Pinch by Velocity Shear," S. DeSouza-Machado, A. B. Hassam, and Ramin Sina, Phys. Plasmas 7, 4632-4643 (2000). (doi: 10.1063/1.1316086)
  • "Target Waves in the Complex Ginzburg-Landau Equation," Matthew Hendrey, Keeyeol Nam, Parvez Guzdar, and Edward Ott, Phys. Rev. E 62, 7627 (2000). (doi: 10.1103/PhysRevE.62.7627)
  • "Spiral Wave Dynamics in Oscillatory Inhomogeneous Media," M. Hendrey, E. Ott, and T. M. Antonsen, Phys. Rev. E 61, 4943 (2000). (doi: 10.1103/PhysRevE.61.4943)
  • "Measurement of Wave Chaotic Eigenfunctions in the Time-Reversal Symmetry-Breaking Crossover Regime," S. H. Chung, A. Gokirmak, D. H. Wu, J.S.A. Bridgewater, E. Ott, T. M. Antonsen, and S. M. Anlage, Phys. Rev. Lett. 85, 2482-2485 (2000). (doi: 10.1103/PhysRevLett.85.2482)
  • "The Effects of Finite Lifetime of Passive Scalars and Vorticity on Their Power Spectra," K. Nam, T. M. Antonsen, Jr., P. N. Guzdar, and E. Ott, Physica A 288, 265-279 (2000). (doi: 10.1016/S0378-4371(00)00426-X)