- K Glass and M Girvan, Finding New Order in Biological Functions from the Network Structure of Gene Annotation. PLoS Comput Biol, e1004565 (2015).
- WL Ku, M Girvan, and E Ott, Dynamical transitions in large systems of mean field-coupled Landau-Stuart oscillators: Extensive chaos and cluster states. Chaos, 123122 (2015). (ArXiv version)
- J Harada, D Darmon, M Girvan, and W Rand, Forecasting High Tide: Predicting Times of Elevated Activity in Online Social Media. In Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (2015). (SSRN version)
- A Melchionna, J Caloca, S Squires, TM Antonsen, E Ott, and M Girvan, Impact of imperfect information on network attack. Physical Review E 91 (3), 032807 (2015). (ArXiv version)
- H Karathia, C Kingsford, M Girvan, and S Hannenhalli, A pathway-centric view of spatial proximity in the 3D nucleome across cell lines. bioRxiv, 027045 (2015).

- D Darmon and M Girvan, Complexity-Regularized Regression for Serially-Correlated Residuals with Applications to Stock Market Data. Entropy (2014).
- A Zitin, A Gorowara, S Squires, M Herrera, TM Antonsen, M Girvan, E Ott, Spatially embedded growing small-world networks, Scientific Reports (2014).
- S Squires, A Pomerance, M Girvan, E Ott, Stability of Boolean networks: The joint effects of topology and update rules. Physical Review E 90 (2), 022814 (2014). (ArXiv version)
- M Mailman, M Harrington, M Girvan and W Losert, Consequences of Anomalous Diffusion in Disordered Systems under Cyclic Forcing. Physical Review Letters 112 (22), 228001 (2014). (ArXiv version)
- K Glass and M Girvan, Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets. Scientific Reports (2014).

- J Platig, E Ott and M Girvan, Robustness of network measures to link errors. Physical Review E 88 (6), 062812 (2013). (ArXiv version)
- WL Ku, M Girvan, GC Yuan, F Sorrentino and E Ott, Modeling the dynamics of bivalent histone modifications. PloS one 8 (11), e77944 (2013).
- H Wang, G Duggal, R Patro, M Girvan, S Hannenhalli and C Kingsford, Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin. Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics (2013).
- D Darmon, J Sylvester, M Girvan and W Rand, Predictability of user behavior in social media: Bottom-up v. top-down modeling. Proceedings of the International Conference on Social Computing (SocialCom) (2013). (ArXiv version)
- S Squires, K Sytwu, D Alcala, TM Antonsen, E Ott and M Girvan, Weakly explosive percolation in directed networks. Physical Review E 87 (5), 052127 (2013). (ArXiv version)

- S Chauhan, M Girvan and E Ott, A network function-based definition of communities in complex networks. Chaos 033129 (2012).
- S Squires, E Ott and M Girvan, Dynamical instability in Boolean networks as a percolation problem. Physical Review Letters 109 (8), 085701 (2012). (ArXiv version)
- K Glass, E Ott, W Losert and M Girvan, Implications of functional similarity for gene regulatory interactions. Journal of The Royal Society Interface (2012).
- A Pomerance, M Girvan and E Ott, Stability of Boolean networks with generalized canalizing rules. Physical Review E 85 (4), 046106 (2012). (ArXiv version)
- D Anderson, A Tenzer, G Barlev, M Girvan, TM Antonsen and E Ott, Multiscale dynamics in communities of phase oscillators. Chaos 22 (1), 013102 (2012). (ArXiv version)
- WL Ku, G Duggal, Y Li, M Girvan and E Ott, Interpreting patterns of gene expression: Signatures of coregulation, the data processing inequality, and triplet motifs. PloS one 7 (2), e31969 (2012).
- S Slotterback, M Mailman, K Ronaszegi, M van Hecke, M Girvan and W Losert, Onset of irreversibility in cyclic shear of granular packings. Physical Review E 85 (2), 021309 (2012). (ArXiv version)

- CP Kempes, GB West, K Crowell, and M Girvan, Predicting Maximum Tree Heights and Other Traits from Allometric Scaling and Resource Limitations. PLoS ONE 6(6): e20551 (2011).
- M Herrera, S McCarthy, S Slotterback, E Cephas, W Losert, and M Girvan, The Path to fracture in granular flows: Dynamics of contact networks. Phys. Rev. E 83, 061303 (2011). (ArXiv version)
- J Stout, M Whiteway, E Ott, M Girvan, and TM Antonsen, Local synchronization in complex networks of coupled oscillators. Chaos 21, 025109 (2011).

- O Peters and M Girvan, Universality under conditions of self-tuning. J. Stat. Phys. 141, 1:53-59 (2010). (ArXiv version)
- G Duggal, S Navlakah, M Girvan, and C Kingsford, Uncovering Many Views of Biological Networks Using Ensembles of Near-Optimal Partitions. MultiClust: 1st International Workshop on Discovering, Summarizing and Using Multiple Clusterings at KDD (2010).
- G Barlev, M Girvan and E Ott, Map model for synchronization of systems of many coupled oscillators. Chaos 20, 023109 (2010).

- S Chauhan, M Girvan and E Ott, Spectral Properties of Networks with Community Structure. Phys. Rev. E 80, 056114 (2009).
- A Pomerance, E Ott, M Girvan and W Losert, The Effect of Network Topology on the Stability of Discrete State Models of Genetic Control. Proc. Natl. Acad. Sci. (2009). (ArXiv version)

- TM Antonsen, R Faghih, M Girvan, E Ott, and J Platig, External periodic driving of large systems of globally coupled phase oscillators. Chaos, 18, 037112 (2008). (ArXiv version)
- E Ott, J Platig, TM Antonsen, and M Girvan, Echo phenomena in large systems of coupled oscillators. Chaos, 18, 037115 (2008). (ArXiv version)

- JC Flack, M Girvan, FBM de Waal, and DC Krakauer, Policing stabilizes construction social niches in primates. Nature, 439, 426-429 (2006).
- D Wiley, Strogatz SH, and Girvan M, The size of the sync basin. Chaos 16, 015103 (2006).

- M Girvan and MEJ Newman, Community structure in social and biological networks. Proc. Natl. Acad. Sci. USA 99, 8271-8276 (2002). (ArXiv version)
- M Girvan, DS Callaway, MEJ Newman, and SH Strogatz, A simple model of epidemics with pathogen mutation. Phys Rev. E 65, 031915 (2002). (ArXiv version)